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In January 2023, we introduced new functionality which allows TRE users to install packages available within conda-forge, without needing to make a request to HIC Support to add packages for you. This works in the same way as our CRAN proxy, which performs live scanning of packages as they are downloaded. If your workspace was created prior to January, some manual changes will be required to your workspace. As of August 2024, we also allow package installation from the bioconda repository, enabling installation of packages like plink.
Conda is an open source management system that is used to managing packages in various programming languages. This may be more applicable to Python TRE Users.
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conda install -c http://conda.hic-tre.dundee.ac.uk/conda-forge/ --override-channels numpy |
☣️ Enabling bioconda
As of August 2024, we also allow package installation from the bioconda repository. You will need to manually enable this channel.
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$ conda config --append channels http://conda.hic-tre.dundee.ac.uk/bioconda/ |
\uD83D\uDCD8 Instructions
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